Allocations doctorales financées

Le LabEx CeMEB a financé des allocations doctorales, dans le cadre d'AAP visant à promouvoir une coopération forte avec un partenaire du monde non-académique impliqué dans la thèse. L’objectif de ces partenariats est d’accroître les chances de recrutement du futur docteur d’une part (acquisitions de compétences complémentaires d'intérêt pour le monde non-académique), et de développer un transfert entre le partenaire et la communauté scientifique du CeMEB d’autre part.

Voir ci dessous la liste des thèses (co)financées dans le cadre d'AAP menés par CeMEB.

PUBLICATIONS (Doctorants et Postdoctorants)

- 2011 -

Descamp P, Holon F, Ballesta L, Guilbert A, Guillot M, Boissery P, Raimondino V, Deter J (2011) Fast and easy method for seagrass monitoring: application of acoustic telemetry to precision mapping of Posidonia oceanica beds. Marine Pollution Bulletin 62 (2): 284-292. [CeMEB Ph-D]

- 2012 -

Deter J, Descamp P, Ballesta L, Boissery P, Holon F (2012) A preliminary study toward an index based on coralligenous assemblages for the ecological status assessment of Mediterranean French coastal waters. Ecological Indicators 20: 345-352. [CeMEB Ph-D]

Deter J, Descamp P, Boissery P, Ballesta L, Holon F (2012) A rapid photographic method detects depth gradient in coralligenous assemblages. Journal of Experimental Marine Biology and Ecology 418: 75-82. [CeMEB Ph-D]

- 2013 -

Blanc L, Marboutin E, Gatti S, Gimenez O (2013) Abundance of rare and elusive species: Empirical investigation of closed versus spatially explicit capture-recapture models with lynx as a case study. Journal of Wildlife Management 77 (2): 372-378. [CeMEB Ph-D]

Gimenez O, Abadi F, Barnagaud JY, Blanc L, Buoro M, Cubaynes S, Desprez M, Gamelon M, Guilhaumon F, Lagrange P, Madon B, Marescot L, Papadatou E, Papaix J, Peron G, Servanty S (2013) How can quantitative ecology be attractive to young scientists? Balancing computer/desk work with fieldwork. Animal Conservation 16 (2): 134-136. [CeMEB Ph-D]

- 2014 -

Blanc L, Marboutin E, Gatti S, Zimmermann F, Gimenez O (2014) Improving abundance estimation by combining capture-recapture and occupancy data: example with a large carnivore. Journal of Applied Ecology 51 (6): 1733-1739. [CeMEB Ph-D]

Gimenez O, Blanc L, Besnard A, Pradel R, Doherty PF, Marboutin E, Choquet R (2014) Fitting occupancy models with E-SURGE: hidden Markov modelling of presence-absence data. Methods in Ecology and Evolution 5 (6): 592-597. [CeMEB Ph-D]

Le Saout S, Chollet S, Chamaille-Jammes S, Blanc L, Padie S, Verchere T, Gaston AJ, Gillingham MP, Gimenez O, Parker KL, Picot D, Verheyden H, Martin JL (2014) Understanding the paradox of deer persisting at high abundance in heavily browsed habitats. Wildlife Biology 20 (3): 122-135. [CeMEB Ph-D]

- 2015 -

Del’Ariccia G, Blanc L, Bonadonna F, Sanz-Aguilar A (2015) Mediterranean storm petrels rely on nest position for homing after migration: a test with artificial nest-boxes. Animal Behaviour 107: 97-104. [CeMEB Ph-D]

Hammoudi A, Iosifescu O, Bernoux M (2015) Mathematical analysis of a nonlinear model of soil carbon dynamics. Differential Equations and Dynamical Systems 23 (4): 453-466. [CeMEB Ph-D]

Holon F, Boissery P, Guilbert A, Freschet E, Deter J (2015) The impact of 85 years of coastal development on shallow seagrass beds (Posidonia oceanica L. (Delile)) in South Eastern France: A slow but steady loss without recovery. Estuarine, Coastal and Shelf Science 165: 204-212. [CeMEB Ph-D]

Holon F, Mouquet N, Boissery P, Bouchoucha M, Delaruelle G, Tribot A-S, Deter J (2015) Fine-scale cartography of human impacts along French Mediterranean coasts: a relevant map for the management of marine ecosystems. PLoS ONE 10 (8): e0135473. [CeMEB Ph-D]

- 2016 -

Boulinier T, Kada S, Ponchon A, Dupraz M, Dietrich M, Gamble A, Bourret V, Duriez O, Bazire R, Tornos J, Tveraa T, Chambert T, Garnier R, McCoy KD (2016) Migration, prospecting, dispersal? What host movement matters for infectious agent circulation? Integrative and Comparative Biology 56 (2): 330-342. [CeMEB Post-Doc fellow]

Doxa A, Holon F, Deter J, Villéger S, Boissery P, Mouquet N (2016) Mapping biodiversity in three-dimensions challenges marine conservation strategies: The example of coralligenous assemblages in North-Western Mediterranean sea. Ecological Indicators 61: 1042-1054. [CeMEB Ph-D]

Funk A, Goutard F, Miguel E, Bourgarel M, Chevalier V, Faye B, Peiris M, Kerkhove MV, Roger F (2016) Mers-coV at the animal–human interface: inputs on exposure pathways from an expert-opinion elicitation. Frontiers in Veterinary Science 3: 88. [CeMEB Post-Doc fellow]

Jacob C, Vaissière AC, Bas A, Calvet C (2016) Investigating the inclusion of ecosystem services in biodiversity offsetting. Ecosystem Services 21: 92-102. [CeMEB Post-Doc fellow]

Leitwein M, Gagnaire P-A, Desmarais E, Guendouz S, Rohmer M, Berrebi P, Guinand B (2016) Genome-wide nucleotide diversity of hatchery-reared Atlantic and Mediterranean strains of brown trout Salmo trutta compared to wild Mediterranean populations. Journal of Fish Biology 89 (6): 2717-2734. [CeMEB Ph-D]

Miguel E, Perera RAPM, Baubekova A, Chevalier V, Faye B, Akhmetsadykov N, al. e (2016) Absence of Middle East respiratory syndrome coronavirus in camelids, Kazakhstan, 2015. Emerging Infectious Disease 22 (3): 555-557. [CeMEB Post-Doc fellow]

Petersen JM, Kemper A, Gruber-Vodicka H, Cardini U, van der Geest M, Kleiner M, Bulgheresi S, Mußmann M, Herbold C, Seah BKB, Antony CP, Liu D, Belitz A, Weber M (2016) Chemosynthetic symbionts of marine invertebrate animals are capable of nitrogen fixation. Nature Microbiology 2: 16195. [CeMEB Post-Doc fellow]

Potier S, Bonadonna F, Kelber A, Duriez O (2016) Visual acuity in an opportunistic raptor, the chimango caracara (Milvago chimango). Physiology and Behavior 157: 125–128. [CeMEB Ph-D]

Potier S, Bonadonna F, Kelber A, Martin GR, Isard P-F, Dulaurent T, Duriez O (2016) Visual abilities in two raptors with different ecology. Journal of Experimental Biology 219: 2639-2649. [CeMEB Ph-D]

Tribot A-S, Mouquet N, Villéger S, Raymond M, Hoff F, Boissery P, Holon F, Deter J (2016) Taxonomic and functional diversity increase the aesthetic value of coralligenous reefs. Scientific Reports 6: 34229. [CeMEB Ph-D]

Vaissière AC, Bierry A, Quétier F (2016) Mieux compenser les impacts sur les zones humides : modélisation de différentes approches dans la région de Grenoble. Sciences Eaux & Territoires 21: 14-19. [CeMEB Post-Doc fellow]

- 2017 -

Bouchet DC, Cheptou P-O, Munoz F (2017) Mowing influences community-level variation in resource-use strategies and flowering phenology along an ecological succession on Mediterranean road slopes. Applied Vegetation Science 20 (3): 376–387. [CeMEB Ph-D]

Hammoudi A, Iosifescu O, Bernoux M (2017) Mathematical analysis of a spatially distributed soil carbon dynamics model. Analysis and Applications 15 (6): 771-793. [CeMEB Ph-D]

Leclaire S, Bourret V, Bonadonna F (2017) Blue petrels recognize the odor of their egg. Journal of Experimental Biology 220 (17): 3022-3025. [CeMEB Post-Doc fellow]

Leitwein M, Guinand B, Pouzadoux J, Desmarais E, Berrebi P, Gagnaire P-A (2017) A dense brown trout (Salmo trutta) linkage map reveals recent chromosomal rearrangements in the Salmo genus and the impact of selection on linked neutral diversity. G3 Genes, Genomes, Genetics 7 (4): 1365-1376. [CeMEB Ph-D]

Levrel H, Scemama P, Vaissière AC (2017) Should we be wary of mitigation banking? Evidence regarding the risks associated with this wetland offset arrangement in Florida. Ecological Economics 135: 136-149. [CeMEB Post-Doc fellow]

Merle C, Leblois R, Rousset F, Pudlo P (2017) Resampling : an improvement of importance sampling in varying population size models. Theoretical Population Biology 114: 70–87. [CeMEB Ph-D]

Miguel E, Chevalier V, Ayelet G, Bencheikh MN, Boussini H, Chu D, El Berbri I, Fassi-Fihri O, Faye B, Grosbois V, Fekadu G, Perera M, Traore A, So T, Ng C, Roger F, Peiris M (2017) Risk factors for MERS coronavirus sero-prevalence and virus detection in dromedary camels in Ethiopia, Morocco and Burkina Faso. Eurosurveillance 22 (13): 30498. [CeMEB Post-Doc fellow]

Pioch S, Johnston MW, Vaissière AC, Berger F, Jacob C, Dodge R (2017) An update of the Visual_HEA software to improve the implementation of the Habitat Equivalency Analysis method. Ecological Engineering 105: 276-283. [CeMEB Post-Doc fellow]

Potier S, Bonadonna F, Martin GR, Isard P-F, Dulaurent T, Mentek, M., Duriez O (2017) Visual field and foveal characteristics of two species of Falconidae with different ecology. Ibis 160: 54-61. [CeMEB Ph-D]

Potier S, Mitkus M, Bonadonna F, Duriez O, Isard P-F, Dulaurent T, Mentek M, Kelber A (2017) Eye size, fovea and foraging ecology in accipitriform raptors. Brain, Behavior and Evolution 90: 232-242. [CeMEB Ph-D]

Riquet F, Simon A, Bierne N (2017) Weird genotypes? Don't discard them, transmissible cancer could be an explanation. Evolutionary Applications 10 (2): 140-145. [CeMEB Post-Doc fellow]

Vaissière AC, Levrel H, Scemama P (2017) Biodiversity offsetting: clearing up misunderstandings between conservation and economics to take further action. Biological Conservation 206: 258–262. [CeMEB Post-Doc fellow]

- 2018 & sous presse -

Bourret V, Gamble A, Tornos J, Jaeger A, Delord K, Barbraud C, Tortosa P, Kada K, Thiebot J-B, Thibault E, Gantelet H, Weimerskirch H, Garnier R, Boulinier T (2018) Vaccination protects endangered albatross chicks against avian cholera. Conservation Letters sous presse:  [CeMEB Post-Doc fellow]

Bykova O, Limousin J-M, Ourcival J-M, Chuine I (2018) Water deficit disrupts male gametophyte development in Quercus ilex. Plant Biology 20 (3): 450-455. [CeMEB Post-Doc fellow]

Chu DKW, Hui KPY, Perera R, Miguel E, Niemeyer D, Zhao J, Channappanavar R, Dudas G, Oladipo JO, Traore A, Fassi-Fihri O, Ali A, Demissie GF, Muth D, Chan MCW, Nicholls JM, Meyerholz DK, Kuranga SA, Mamo G, Zhou Z, So RTY, Hemida MG, Webby RJ, Roger F, Rambaut A, Poon LLM, Perlman S, Drosten C, Chevalier V, Peiris M (2018) MERS coronaviruses from camels in Africa exhibit region-dependent genetic diversity. Proceedings of the National Academy of Sciences of the USA 115 (12): 3144-3149. [CeMEB Post-Doc fellow]

Débarre F, Rode NO, Ugelvig L (2018) Gender equity at scientific events. Evolution Letters sous presse:  [CeMEB Post-Doc fellow]

Galan M, Pons JB, Tournayre O, Pierre E, Leuchtmann M, Pontier D, Charbonnel N (2018) Metabarcoding for the parallel identification of several hundred predators and their preys: application to bat species diet analysis. Molecular Ecology Resources sous presse: doi: 10.1111/1755-0998.12749. [CeMEB Ph-D]

Holon F, Guilhem M, Valeriano P, Nicolas M, Thomas B, Pierre D, Anne-Sophie T, Pierre B, Julie D (2018) A  predictive model based on multiple coastal anthropogenic pressures explains the degradation status of a marine ecosystem: implications for management and conservation. Biological Conservation 222 125–135. [CeMEB Ph-D]

Jaeger A, Lebarbenchon C, Bourret V, Bastien M, Lagadec E, Thiebot J-B, Boulinier T, Delord K, Barbraud C, Marteau C, Dellagi K, Tortosa P, Weimerskirch H (2018) Avian cholera outbreaks threaten seabird species on Amsterdam Island. PLoS ONE: sous presse [CeMEB Post-Doc fellow]

Potier S, Besnard MM, Schikorski D, Buatois B, Duriez O, Gabirot M, Leclaire S, Bonadonna F (2018) Preen oil chemical composition encodes individuality, seasonal variation and kinship in black kites Milvus migrans. Journal of Avian Biology: sous presse. [CeMEB Ph-D]

Potier S, Duriez O, Cunningham GB, Bonhomme V, O'Rourke C, Fernandez-Juricic E, Bonadonna F (2018) Visual field shape and foraging ecology in diurnal raptors. Journal of Experimental Biology: sous presse. [CeMEB Ph-D]

Roussel S, Tardieu L, Vaissière A-C (2018) Compensation écologique et agriculture : est-ce compatible ? Revue Economique sous presse:  [CeMEB Post-Doc fellow]

Vaissière A-C, Tardieu L, Quétier F, Roussel S (2018) Preferences for biodiversity offset contracts on arable land: a choice experiment study with farmers. European Review of Agricultural Economics: sous presse. [CeMEB Post-Doc fellow]

Potier S, Duriez O, Célérier A, Liegeois J-L, Bonadonna F (En révision) Sight or smell: which senses do scavenging raptors use to find food? Animal Cognition: en revision. [CeMEB Ph-D]


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